CDS

Accession Number TCMCG002C14646
gbkey CDS
Protein Id XP_020096072.1
Location complement(join(253257..253303,253426..253498,253599..253661,253835..253935,254026..254149,254952..255992,256079..256261,256344..256430,256594..256683,256820..256888,257009..257077,257178..257235,257456..257513,257626..257693,257856..257935,258456..258519,258705..258776,258873..258932,259124..259178,259272..259305,260861..260947,261211..261276,261391..261660))
Gene LOC109715468
GeneID 109715468
Organism Ananas comosus

Protein

Length 972aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA371634
db_source XM_020240483.1
Definition pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X2 [Ananas comosus]

EGGNOG-MAPPER Annotation

COG_category A
Description pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12813        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACTGTTGTAATCGTAAATGATATTCAACGAAATCTTAATTCTTTCTTCCTTCCTTGCTTTTTTGTGCCCCAGAGTTATCAGAAAGAGGAAAGGGAGGCAGCTCTGTTTGCGAAAAAGCAAAGGAGCTACAAGCTATTAGAACCTGAGGATGATGATGGAGATGACCAAGTAGCGTCTACTACGTCAACTTCTCAGCCAGGAAAAGTGACTTCTAATCGAAAGCACTTTAGGAAGAAAAGCGAAACCCAAGATAGTGACGATGACGAGGCAACGACAGTGGCTGAAAGACCTGTTCGCAAGCGTACTTTGGATGATAATGATGATGATTTTGAGTCAGAAGAAGCCAGGATTAAAGATCAAGAAGAGAGAGCTCAATTGGAGAGGAACATGAGAGAAAGAGATGCAGCTGCAACTCGGAAGTTGACAGAACCAAAGTTAACGAAGGCGCAGGAAGAGGAGATTATTCGAAGAACTCAAGCATCAGAGAAAAATGATACTTCAGAACTGAGAAAAGTTTCAAGGCAAGTTTATTTGCAAAAGCGGAGAGATCAGAAGCTTTTGGAGATTCGGGATGACATTATAGATCATGAGTATATATTTGAGGGCGTGAAGCTGACGGAAGCAGAAGAACGTGAGTATAGGTACAAAAGAAAAATTTACGAGCTTGCAAAAGAGCACTTGGAGGATGTGGACAATATTAATGAGTACAAAATGCCTGAGGCATACGACATGGAGGGACGGGTCAATCAAGAGAAAAGATTTGCTGCAGCTATGCAGCGTTACAGGGACCCTGAGGCTGCAGAGAAAATGAATCCATTTGCCGAACAAGAAGCCTGGGAGGAACACCAAATAGGAAAGGCAACCATAAAATTTGGCTCAAAAGATAGAAAGCAAGCTGCTGATGACTATCAGTATGTTTTTGAGGATGGGGTTGAGTTCATCAAAGCATCTGTCATGGATGGAACTCAGTTTGAAGATGAATTATCTTCCGGGAATGATGACTCTTCAGAGGCAAAAACCATGTTGGAGAAGCTGCAGGAAGATAGGAAAAGTCTGCCTATCTATCGTTACAGAGAGGAGTTACTTAAGGCCATCCAAGATCATCAGGTTCTTGTTATTGTTGGAGAGACAGGCTCTGGAAAGACTACTCAGATACCTCAATATCTTCATGAAGCTGGGTATACAAAAGCTGGGAAGATTGCATGCACACAGCCTCGCCGTGTTGCTGCAATGAGCGTGGCGGCAAGGGTGTCCCAGGAGATGGGTGTTAAACTTGGGCATGAGGTTGGTTACTCAATTAGGTTTGAGGATTGCACCTCGGAAAAAACTGTACTCAAGTACATGACAGATGGTATGCTGTTGAGGGAATTCCTTGGTGAACCAGATTTGGCTAGCTACAGTGTTGTGATGGTGGATGAGGCTCATGAGCGAACACTATCAACTGACATATTATTCGGGTTGGTGAAGGATATTGCTCGTTTTCGAAAAGATCTCAAGTTGCTTATTTCGAGTGCGACCCTGGATGCGGAGAAATTCAGTGATTACTTTGACTCTGCCCCAATTTTTAAAATTCCAGGGAGGCGATACCCTGTCGAAATACACTTCACGACAGCACCGGAAGCAGACTACATTGATGCTGCGATTGTTACAGTTCTTCAAATACACGTGACCCAGCCACTTGGTGACATCTTAGTGTTCCTTACAGGGCAGGAGGAAATTGAAACAGTCGATGAAATCCTTAAGCACAGAATAAAAGGTTTGGGCACGAAGATAGCGGAACTTATCATCTGCCCGATTTACGCCAACCTCCCCACTGAGCTGCAAGCAAAGATTTTTGAACCTACACCTGAAGGTGCCCGCAAGGTTGTTTTGGCTACTAATATAGCCGAAACATCGTTAACAATTGATGGAATAAAATATGTTGTCGACCCTGGATTTTGTAAAATTAAATCATATAACCCTAGAACTGGGATGGAGTCTTTGCTAGTGAATCCAATCTCAAAGGCATCTGCAGAGCAAAGGGCTGGTAGGTCTGGGCGTACTGGACCTGGAAAATGTTTTCGCCTTTATACTAAGTATAATTACGATCATGATCTCGAGGAGAACAGTGTTCCAGAGATTCAACGGACGAATTTAGCGAACGTTGTGCTCACTCTTAAAAGTTTGGGTATTCATGACTTGGTCAATTTTGATTTCATGGATCCTCCCCCATCAGAGGCATTGCTTAAGGCTCTTGAGCAACTATTTGCTCTTAATGCGCTGAATAGCCGAGGCGAGTTGACTAAGACTGGGAGAAGGATGGCTGAGTTTCCACTGGACCCCATGCTTTCAAAAATGATAGTTGCTTCGGACAAGTACAAGTGTTCTGATGAGATCATATCCATTGCGGCGATGTTGTCGGTTGGAAATTCGATATTTTATCGTCCAAAGGACAAACAAGTTCATGCAGACAATGCAAGGTTGAATTTCCACACTGGGAATGTTGGAGATCATATTGCGTTGCTTAACGTAAGAAGTATGAAAAGAGCTAGAGATATTCGTGATCAATTAGAGGGACTCTTGGAAAGAGTTGAGATTGAGCTCACTTCAAATGGTAATGACTTAGATACCATTAAAAAGGCAATAACATCAGGTTTTTTCCACCATTCTGCGAAGTTGCAAAAGAATGGTTCTTATAGAACGGTCAAAAACCCCCAAACAGTATATATACATCCAAACTCCGGACTAGCACAGGTGCTTCCTCGTTGGGTGATATACCACGAGTTGGTTCTCACAACGAAGGAGTTTATGAGACAGGTTACGGAACTGAAGCCCGAATGGCTTGTAGAAATCGCGCCGCACTACTATCAGCTTAAAGATGTCGATGATTCCGGAGCGAAGAAATTACCTCGTGGGACAGGTCGAGCTGCATTGTAG
Protein:  
MTVVIVNDIQRNLNSFFLPCFFVPQSYQKEEREAALFAKKQRSYKLLEPEDDDGDDQVASTTSTSQPGKVTSNRKHFRKKSETQDSDDDEATTVAERPVRKRTLDDNDDDFESEEARIKDQEERAQLERNMRERDAAATRKLTEPKLTKAQEEEIIRRTQASEKNDTSELRKVSRQVYLQKRRDQKLLEIRDDIIDHEYIFEGVKLTEAEEREYRYKRKIYELAKEHLEDVDNINEYKMPEAYDMEGRVNQEKRFAAAMQRYRDPEAAEKMNPFAEQEAWEEHQIGKATIKFGSKDRKQAADDYQYVFEDGVEFIKASVMDGTQFEDELSSGNDDSSEAKTMLEKLQEDRKSLPIYRYREELLKAIQDHQVLVIVGETGSGKTTQIPQYLHEAGYTKAGKIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRKDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTTAPEADYIDAAIVTVLQIHVTQPLGDILVFLTGQEEIETVDEILKHRIKGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFCKIKSYNPRTGMESLLVNPISKASAEQRAGRSGRTGPGKCFRLYTKYNYDHDLEENSVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDPPPSEALLKALEQLFALNALNSRGELTKTGRRMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVRSMKRARDIRDQLEGLLERVEIELTSNGNDLDTIKKAITSGFFHHSAKLQKNGSYRTVKNPQTVYIHPNSGLAQVLPRWVIYHELVLTTKEFMRQVTELKPEWLVEIAPHYYQLKDVDDSGAKKLPRGTGRAAL